PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA12g14730
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family NF-YA
Protein Properties Length: 131aa    MW: 14774.9 Da    PI: 11.1309
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA12g14730genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA93.91.8e-293690358
   CBFB_NFYA  3 plYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58
                p+YVNaKQy++IlkRRq Rak ++++kl  k+rkpylheSRh+hA++R+Rg gG F
  CA12g14730 36 PIYVNAKQYSAILKRRQVRAKRQAQNKL-VKNRKPYLHESRHRHAMKRARGYGGCF 90
                9***************************.*************************87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005219.6E-323293IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115232.9253393IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.1E-253690IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.5E-213658IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.5E-216790IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    Send to blast
MGSAGEFGFA APRWVLXVGV TSTRVALPLE CTESLPIYVN AKQYSAILKR RQVRAKRQAQ  60
NKLVKNRKPY LHESRHRHAM KRARGYGGCF LTTKNMQQSK PSSPKHDRNI FNRQAGGLEI  120
EQFLLSCILD *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A1e-203695463NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17483RHRHAMKRAR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ8654091e-156KJ865409.1 Capsicum annuum cultivar CMS line FS4401 mitochondrion, complete genome.
GenBankKJ8654101e-156KJ865410.1 Capsicum annuum cultivar Jeju mitochondrion, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqYP_009049690.13e-64hypothetical protein (mitochondrion)
SwissprotQ9LNP61e-31NFYA8_ARATH; Nuclear transcription factor Y subunit A-8
TrEMBLA0A075VW313e-64A0A075VW31_CAPAN; Uncharacterized protein
STRINGPGSC0003DMT4000559824e-61(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA48002027
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54160.14e-26nuclear factor Y, subunit A5